Work with semantic and linked data technologies

  • Installation of the Virtuoso Universal Server for use as a triplestore and SparQL endpoint. Also installed the GO, Bind, NCI-NC, and Reactome components downloaded from Bio2RDF.

  • Installation of a D2R gateway exposing a portion of the local Centralized Life Sciences Data (CLSD) service as Linked Data, and also via a SparQL endpoint.

  • Use of several Linked data clients, such as the Tabulator, the Explorator, Twinkle, RDF-Gravity, etc.

  • Explored several tools for searching PubMed: GOPubMed, Texflame, and the Enju Natural Language parser, for possible use on our CTSI hub.

    Some musings:

    Some other work: